Tesi etd-09122024-170709 |
Link copiato negli appunti
Tipo di tesi
Tesi di laurea magistrale
Autore
BARBOTTO, STEFANO
URN
etd-09122024-170709
Titolo
Computational simulation of excitation transfer in DNA oligomers
Dipartimento
CHIMICA E CHIMICA INDUSTRIALE
Corso di studi
CHIMICA
Relatori
relatore Granucci, Giovanni
Parole chiave
- "DNA oligomers"
- "excitonic model"
- "fluorescence decay"
- "local diabatization"
- "mixed quantum-classical dynamics"
- "nonadiabatic dynamics"
- "surface hopping"
Data inizio appello
21/10/2024
Consultabilità
Completa
Riassunto
In this thesis, HP6 double strand (a DNA oligomer made of adenine and thymine) excited state behaviour is studied, employing an implementation of Frenkel exciton model in a semiempirical (AM1) framework. After an initial full-MM (Tinker) and subsequent QM/MM (NewtonX) Thermalizations, spectra (both adiabatic and diabatic) are produced. In the following, excited state nonadiabatic dynamics is performed (NewtonX), allowing a collective of trajectories to decay to ground state. The results are analyzed and fluorescence decay pathways are proposed, based on excitation localization on chromophores and transfer of excitation among them.
File
Nome file | Dimensione |
---|---|
thesisbarbotto.pdf | 2.08 Mb |
Contatta l’autore |