Tesi etd-11032022-155321 |
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Tipo di tesi
Tesi di dottorato di ricerca
Autore
YAGHOUBI JOUYBARI, MARTHA
URN
etd-11032022-155321
Titolo
Quantum Dynamics of Decay Processes in Photoexcited Nucleobases and Small Oligomers
Settore scientifico disciplinare
CHIM/02
Corso di studi
SCIENZE CHIMICHE E DEI MATERIALI
Relatori
tutor Santoro, Fabrizio
commissario Prof. Degano, Ilaria
commissario Prof. Garavelli, Marco
commissario Prof. Pastore, Mariachiara
commissario Prof. Degano, Ilaria
commissario Prof. Garavelli, Marco
commissario Prof. Pastore, Mariachiara
Parole chiave
- DNA
- photo-excitation
- quantum dynamics
- ultra-fast decay
Data inizio appello
27/10/2022
Consultabilità
Completa
Riassunto
DNA strongly absorbs UV light and this can trigger harmful processes causing alteration of the genetic code and cellular death. However, DNA and its components, the nucleobases, have an intrinsic capability to dissipate the excess electronic energy into heat thanks to a combination of intra-molecular and inter-molecular non-radiative processes, which strongly reduce the risk of potentially dangerous photo reactions. Although deeply studied in literature, many aspects of these mechanisms remain to be clarified. DNA can also be seen as a prototype of many multichromophoric systems so the interest in its photophysics goes beyond its biological relevance. This thesis is devoted to a computational study of DNA photophysics with dynamical approaches. The ultra-fast decays in DNA occur through non-radiative transitions triggered by the coupling between electrons and nuclei motions. These are intrinsically quantum phenomena and therefore we chose to tackle them with fully quantum dynamical approaches.
More specifically, in this thesis, we have proposed and applied a computational protocol based on the parameterization with time-dependent density functional theory of Linear Vibronic Coupling models able to describe the competition between intra-base and inter-base decay mechanisms, combined with non-radiative propagations of vibronic wavepackets with advanced multilayer multiconfiguration time-dependent Hartree (ML-MCTDH) approaches. With this strategy we have tackled the study of the ultra-fast light-activated dynamics (∼ 100 fs) of DNA components of growing complexity, starting from isolated nucleobases and their derivatives up to double-stranded tetrads.
More specifically, in this thesis, we have proposed and applied a computational protocol based on the parameterization with time-dependent density functional theory of Linear Vibronic Coupling models able to describe the competition between intra-base and inter-base decay mechanisms, combined with non-radiative propagations of vibronic wavepackets with advanced multilayer multiconfiguration time-dependent Hartree (ML-MCTDH) approaches. With this strategy we have tackled the study of the ultra-fast light-activated dynamics (∼ 100 fs) of DNA components of growing complexity, starting from isolated nucleobases and their derivatives up to double-stranded tetrads.
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reportactivities.pdf | 460.24 Kb |
Thesisfinal.pdf | 38.87 Mb |
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